LITCHi
Cluster HIVvsMockinLatency-Dn_in-Mock is enriched in the following gene classes
GeneSet DB Hit Count
TF_miRNA Targets.gmt GeneSets 63
Pathways - KEGG_BioCarta.gmt GeneSets 3
TarBase_6beta.gmt GeneSets 2
Pathways - Reactome.gmt GeneSets 1
Chromosomal Bands.gmt GeneSets 4
GO - Molecular Function.gmt GeneSets 3
GO - Cellular Component.gmt GeneSets 3
GO - Biological Process.gmt GeneSets 6
Cluster Name GeneSet Name GeneSet DB log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
HIVvsMockinLatency-Dn in-Mock chr1q21 Chromosomal Bands.gmt GeneSets -2.5 0.00289 141.0 4.0 0.96
HIVvsMockinLatency-Dn in-Mock chr6p21 Chromosomal Bands.gmt GeneSets -1.8 0.01512 211.0 4.0 1.44
HIVvsMockinLatency-Dn in-Mock chr5q31 Chromosomal Bands.gmt GeneSets -2.4 0.00363 91.0 3.0 0.62
HIVvsMockinLatency-Dn in-Mock chr3q13 Chromosomal Bands.gmt GeneSets -3.5 3.2E-4 47.0 3.0 0.32
HIVvsMockinLatency-Dn in-Mock DEFENSE RESPONSE GO - Biological Process.gmt GeneSets -1.9 0.02403 127.0 3.0 0.87
HIVvsMockinLatency-Dn in-Mock CELL CELL SIGNALING GO - Biological Process.gmt GeneSets -3.1 0.00301 160.0 5.0 1.09
HIVvsMockinLatency-Dn in-Mock IMMUNE RESPONSE GO - Biological Process.gmt GeneSets -4.4 3.4E-4 135.0 6.0 0.92
HIVvsMockinLatency-Dn in-Mock NEUROLOGICAL SYSTEM PROCESS GO - Biological Process.gmt GeneSets -1.7 0.03603 150.0 3.0 1.02
HIVvsMockinLatency-Dn in-Mock IMMUNE SYSTEM PROCESS GO - Biological Process.gmt GeneSets -3.3 0.002 200.0 6.0 1.37
HIVvsMockinLatency-Dn in-Mock TRANSMISSION OF NERVE IMPULSE GO - Biological Process.gmt GeneSets -2.8 0.00523 74.0 3.0 0.51
HIVvsMockinLatency-Dn in-Mock INTRINSIC TO PLASMA MEMBRANE GO - Cellular Component.gmt GeneSets -1.4 0.04006 464.0 6.0 3.17
HIVvsMockinLatency-Dn in-Mock EXTRACELLULAR REGION GO - Cellular Component.gmt GeneSets -2.2 0.00604 168.0 4.0 1.15
HIVvsMockinLatency-Dn in-Mock INTEGRAL TO PLASMA MEMBRANE GO - Cellular Component.gmt GeneSets -1.4 0.03815 459.0 6.0 3.14
HIVvsMockinLatency-Dn in-Mock RNA POLYMERASE II TRANSCRIPTION FACTOR ACTIVITY GO - Molecular Function.gmt GeneSets -1.8 0.01552 139.0 3.0 0.95
HIVvsMockinLatency-Dn in-Mock RECEPTOR ACTIVITY GO - Molecular Function.gmt GeneSets -1.4 0.04028 274.0 4.0 1.87
HIVvsMockinLatency-Dn in-Mock TRANSMEMBRANE RECEPTOR ACTIVITY GO - Molecular Function.gmt GeneSets -2.1 0.00749 177.0 4.0 1.21
HIVvsMockinLatency-Dn in-Mock KEGG CYTOKINE CYTOKINE RECEPTOR INTERACTION Pathways - KEGG_BioCarta.gmt GeneSets -2.7 0.00197 129.0 4.0 0.88
HIVvsMockinLatency-Dn in-Mock KEGG WNT SIGNALING PATHWAY Pathways - KEGG_BioCarta.gmt GeneSets -2.2 0.00661 108.0 3.0 0.74
HIVvsMockinLatency-Dn in-Mock KEGG SYSTEMIC LUPUS ERYTHEMATOSUS Pathways - KEGG_BioCarta.gmt GeneSets -3.4 4.0E-4 50.0 3.0 0.34
HIVvsMockinLatency-Dn in-Mock GPCR ligand binding Pathways - Reactome.gmt GeneSets -2.1 0.00796 114.0 3.0 0.78
HIVvsMockinLatency-Dn in-Mock V$NFKAPPAB 01 TF_miRNA Targets.gmt GeneSets -1.9 0.03341 130.0 3.0 0.89
HIVvsMockinLatency-Dn in-Mock V$PBX1 01 TF_miRNA Targets.gmt GeneSets -2.1 0.0326 111.0 3.0 0.76
HIVvsMockinLatency-Dn in-Mock V$MYCMAX 02 TF_miRNA Targets.gmt GeneSets -2.5 0.02532 141.0 4.0 0.96
HIVvsMockinLatency-Dn in-Mock V$HNF3B 01 TF_miRNA Targets.gmt GeneSets -3.2 0.00933 99.0 4.0 0.68
HIVvsMockinLatency-Dn in-Mock V$HNF4 01 TF_miRNA Targets.gmt GeneSets -1.9 0.03341 130.0 3.0 0.89
HIVvsMockinLatency-Dn in-Mock V$RORA1 01 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 124.0 3.0 0.85
HIVvsMockinLatency-Dn in-Mock V$CREB Q2 TF_miRNA Targets.gmt GeneSets -1.7 0.04126 151.0 3.0 1.03
HIVvsMockinLatency-Dn in-Mock V$CREBP1 Q2 TF_miRNA Targets.gmt GeneSets -1.9 0.03341 131.0 3.0 0.9
HIVvsMockinLatency-Dn in-Mock V$SRF Q6 TF_miRNA Targets.gmt GeneSets -1.9 0.03427 133.0 3.0 0.91
HIVvsMockinLatency-Dn in-Mock V$AP1 Q4 TF_miRNA Targets.gmt GeneSets -1.7 0.04126 153.0 3.0 1.05
HIVvsMockinLatency-Dn in-Mock V$SRF C TF_miRNA Targets.gmt GeneSets -1.9 0.03341 129.0 3.0 0.88
HIVvsMockinLatency-Dn in-Mock V$EGR1 01 TF_miRNA Targets.gmt GeneSets -1.8 0.03831 142.0 3.0 0.97
HIVvsMockinLatency-Dn in-Mock V$NGFIC 01 TF_miRNA Targets.gmt GeneSets -1.9 0.03341 129.0 3.0 0.88
HIVvsMockinLatency-Dn in-Mock V$GFI1 01 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 119.0 3.0 0.81
HIVvsMockinLatency-Dn in-Mock V$TATA 01 TF_miRNA Targets.gmt GeneSets -5.1 4.6E-4 104.0 6.0 0.71
HIVvsMockinLatency-Dn in-Mock V$OLF1 01 TF_miRNA Targets.gmt GeneSets -1.9 0.03341 128.0 3.0 0.87
HIVvsMockinLatency-Dn in-Mock V$HFH3 01 TF_miRNA Targets.gmt GeneSets -3.2 0.00933 98.0 4.0 0.67
HIVvsMockinLatency-Dn in-Mock V$FREAC2 01 TF_miRNA Targets.gmt GeneSets -3.6 0.00811 129.0 5.0 0.88
HIVvsMockinLatency-Dn in-Mock V$FREAC4 01 TF_miRNA Targets.gmt GeneSets -3.0 0.01349 65.0 3.0 0.44
HIVvsMockinLatency-Dn in-Mock V$FREAC7 01 TF_miRNA Targets.gmt GeneSets -2.4 0.02691 92.0 3.0 0.63
HIVvsMockinLatency-Dn in-Mock V$HFH8 01 TF_miRNA Targets.gmt GeneSets -2.2 0.02902 105.0 3.0 0.72
HIVvsMockinLatency-Dn in-Mock V$ZF5 B TF_miRNA Targets.gmt GeneSets -2.0 0.03341 123.0 3.0 0.84
HIVvsMockinLatency-Dn in-Mock V$PAX4 01 TF_miRNA Targets.gmt GeneSets -1.8 0.03831 142.0 3.0 0.97
HIVvsMockinLatency-Dn in-Mock V$MMEF2 Q6 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 118.0 3.0 0.81
HIVvsMockinLatency-Dn in-Mock V$AREB6 04 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 120.0 3.0 0.82
HIVvsMockinLatency-Dn in-Mock V$FOXJ2 01 TF_miRNA Targets.gmt GeneSets -3.4 0.00872 91.0 4.0 0.62
HIVvsMockinLatency-Dn in-Mock V$TBP 01 TF_miRNA Targets.gmt GeneSets -2.3 0.0279 101.0 3.0 0.69
HIVvsMockinLatency-Dn in-Mock V$FOXO1 02 TF_miRNA Targets.gmt GeneSets -2.8 0.01553 120.0 4.0 0.82
HIVvsMockinLatency-Dn in-Mock V$FOXO3 01 TF_miRNA Targets.gmt GeneSets -2.9 0.01553 119.0 4.0 0.81
HIVvsMockinLatency-Dn in-Mock V$STAT5A 03 TF_miRNA Targets.gmt GeneSets -3.0 0.01349 113.0 4.0 0.77
HIVvsMockinLatency-Dn in-Mock V$STAT6 01 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 123.0 3.0 0.84
HIVvsMockinLatency-Dn in-Mock CTTTAAR UNKNOWN TF_miRNA Targets.gmt GeneSets -1.8 0.03589 466.0 7.0 3.18
HIVvsMockinLatency-Dn in-Mock V$FOXM1 01 TF_miRNA Targets.gmt GeneSets -2.1 0.03283 112.0 3.0 0.77
HIVvsMockinLatency-Dn in-Mock V$HNF4ALPHA Q6 TF_miRNA Targets.gmt GeneSets -5.6 4.6E-4 126.0 7.0 0.86
HIVvsMockinLatency-Dn in-Mock V$ATF1 Q6 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 120.0 3.0 0.82
HIVvsMockinLatency-Dn in-Mock V$TFIIA Q6 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 126.0 3.0 0.86
HIVvsMockinLatency-Dn in-Mock V$HNF3ALPHA Q6 TF_miRNA Targets.gmt GeneSets -3.1 0.01122 105.0 4.0 0.72
HIVvsMockinLatency-Dn in-Mock V$LEF1 Q6 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 126.0 3.0 0.86
HIVvsMockinLatency-Dn in-Mock V$HNF1 Q6 TF_miRNA Targets.gmt GeneSets -2.4 0.02691 95.0 3.0 0.65
HIVvsMockinLatency-Dn in-Mock V$AP2 Q3 TF_miRNA Targets.gmt GeneSets -2.6 0.02396 136.0 4.0 0.93
HIVvsMockinLatency-Dn in-Mock V$PIT1 Q6 TF_miRNA Targets.gmt GeneSets -2.4 0.02691 94.0 3.0 0.64
HIVvsMockinLatency-Dn in-Mock V$EGR Q6 TF_miRNA Targets.gmt GeneSets -2.4 0.02691 156.0 4.0 1.07
HIVvsMockinLatency-Dn in-Mock V$FOX Q2 TF_miRNA Targets.gmt GeneSets -2.2 0.02923 106.0 3.0 0.72
HIVvsMockinLatency-Dn in-Mock V$SRF Q4 TF_miRNA Targets.gmt GeneSets -2.7 0.01945 128.0 4.0 0.87
HIVvsMockinLatency-Dn in-Mock V$DR4 Q2 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 125.0 3.0 0.85
HIVvsMockinLatency-Dn in-Mock AGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D TF_miRNA Targets.gmt GeneSets -1.7 0.04126 228.0 4.0 1.56
HIVvsMockinLatency-Dn in-Mock AATGTGA,MIR-23A,MIR-23B TF_miRNA Targets.gmt GeneSets -3.2 0.00933 273.0 7.0 1.87
HIVvsMockinLatency-Dn in-Mock GTGCCAT,MIR-183 TF_miRNA Targets.gmt GeneSets -1.9 0.03341 129.0 3.0 0.88
HIVvsMockinLatency-Dn in-Mock CTGAGCC,MIR-24 TF_miRNA Targets.gmt GeneSets -2.3 0.0279 161.0 4.0 1.1
HIVvsMockinLatency-Dn in-Mock GAGCCAG,MIR-149 TF_miRNA Targets.gmt GeneSets -2.2 0.02902 105.0 3.0 0.72
HIVvsMockinLatency-Dn in-Mock GCAAGGA,MIR-502 TF_miRNA Targets.gmt GeneSets -3.5 0.00872 48.0 3.0 0.33
HIVvsMockinLatency-Dn in-Mock TTTTGAG,MIR-373 TF_miRNA Targets.gmt GeneSets -1.7 0.04201 155.0 3.0 1.06
HIVvsMockinLatency-Dn in-Mock CAGCACT,MIR-512-3P TF_miRNA Targets.gmt GeneSets -2.3 0.02691 97.0 3.0 0.66
HIVvsMockinLatency-Dn in-Mock SMTTTTGT UNKNOWN TF_miRNA Targets.gmt GeneSets -1.7 0.04109 224.0 4.0 1.53
HIVvsMockinLatency-Dn in-Mock YCATTAA UNKNOWN TF_miRNA Targets.gmt GeneSets -1.7 0.04126 229.0 4.0 1.56
HIVvsMockinLatency-Dn in-Mock CAGGTG V$E12 Q6 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 1124.0 14.0 7.68
HIVvsMockinLatency-Dn in-Mock RTAAACA V$FREAC2 01 TF_miRNA Targets.gmt GeneSets -4.7 9.5E-4 474.0 12.0 3.24
HIVvsMockinLatency-Dn in-Mock AAAYWAACM V$HFH4 01 TF_miRNA Targets.gmt GeneSets -2.0 0.03341 122.0 3.0 0.83
HIVvsMockinLatency-Dn in-Mock CTTTGA V$LEF1 Q2 TF_miRNA Targets.gmt GeneSets -2.4 0.02691 539.0 9.0 3.68
HIVvsMockinLatency-Dn in-Mock YTATTTTNR V$MEF2 02 TF_miRNA Targets.gmt GeneSets -1.7 0.04126 315.0 5.0 2.15
HIVvsMockinLatency-Dn in-Mock CCCNNGGGAR V$OLF1 01 TF_miRNA Targets.gmt GeneSets -1.6 0.04822 166.0 3.0 1.13
HIVvsMockinLatency-Dn in-Mock TATAAA V$TATA 01 TF_miRNA Targets.gmt GeneSets -5.2 4.6E-4 495.0 13.0 3.38
HIVvsMockinLatency-Dn in-Mock TGANNYRGCA V$TCF11MAFG 01 TF_miRNA Targets.gmt GeneSets -1.7 0.04157 154.0 3.0 1.05
HIVvsMockinLatency-Dn in-Mock hsa-miR-335-5p targets TarBase_6beta.gmt GeneSets -3.5 3.5E-4 1274.0 19.0 8.71
HIVvsMockinLatency-Dn in-Mock hsa-miR-34a-5p targets TarBase_6beta.gmt GeneSets -2.4 0.0041 294.0 6.0 2.01
Download list of genes
Gene expression pattern of HIVvsMockinLatency-Dn_in-Mock
Figure: : Temporal expression patterns are displayed according to the selected conditions and comparisons. Only infected conditions are displayed, during latency as gray lines or during activation according to the color code for each drug. For individual genes, select one from the table below.
List of genes
Name Fold p p-Adj
657553 -0.79816115 3.9398465E-6 7.1553304E-4
677080 -0.6083142 3.7645496E-4 0.029866748
768465 -0.7389796 6.370282E-5 0.007219972
776570 -0.7097223 1.6503838E-4 0.01636703
778367 -0.65979284 1.715968E-4 0.01690621
858384 -0.70503974 3.6985966E-4 0.029655661
65838476 -3.148107 1.5517033E-8 6.155362E-6
66698850 -1.0647258 6.983145E-5 0.0077973274
66847665 -0.97193253 7.775722E-7 1.7236946E-4
67678255 -0.7264596 1.08583234E-4 0.011288163
67797681 -1.3345019 2.5885E-4 0.022685494
69718249 -1.0321724 5.5312E-10 2.977761E-7
70727384 -0.82225114 3.4410154E-5 0.0044333218
71826580 -0.59822315 5.153521E-4 0.03749917
72497088 -0.6403215 5.260403E-4 0.037759677
72827250 -1.9917512 3.936126E-8 1.3484811E-5
73765482 -0.8021986 1.9625471E-4 0.018842952
74857866 -1.0050739 1.6622362E-9 7.830172E-7
75767051 -0.67853236 2.0375631E-4 0.019196391
75828449 -0.7210409 3.1250544E-4 0.02605503
76697049 -0.89395785 3.1580954E-4 0.026156664
77808055 -0.9017122 2.0829346E-7 5.6068136E-5
78756850 -1.4409957 4.4961914E-7 1.11107525E-4
79689049 -1.1724781 5.647308E-4 0.039779212
80828255 -0.94427377 5.4632255E-6 9.4658235E-4
84677055 -1.6351388 0.0 0.0
85678051 -0.6916423 2.2850545E-4 0.020625696
112515054 -9.200338 0.0 0.0
6583736749 -0.59903437 6.397085E-4 0.043241996
6750676851 -0.5893474 4.0911615E-4 0.031974405
6865678449 -1.129656 8.539757E-5 0.009261029
6879677551 -1.2888361 1.443831E-7 4.2675114E-5
6885838050 -1.4232215 2.1969256E-6 4.3008386E-4
6970726750 -1.0929191 5.0895005E-7 1.2374054E-4
6980726549 -0.7106017 3.679171E-4 0.029655661
7065657250 -0.7736139 1.1881644E-5 0.0018656657
7075668053 -0.83257437 1.0630862E-6 2.2570367E-4
7167698450 -0.9803241 1.3122642E-4 0.013365588
7182658380 -0.95632577 6.801801E-7 1.5534901E-4
7576727651 -0.6655966 2.3375271E-4 0.02097374
7673778350 -0.805473 1.2717016E-4 0.013040564
8065828671 -0.7603506 4.796812E-6 8.4078073E-4
8076657149 -0.9961653 7.272347E-7 1.6361695E-4
8271657152 -1.4418772 1.3987578E-10 7.809213E-8
8369808049 -0.8189692 6.0854346E-4 0.042078827
8673808249 -0.9627333 1.0342745E-4 0.010902555
9070805154 -0.6704188 2.2594476E-4 0.020517418
657683506776 -1.3382692 2.726629E-7 7.086415E-5
657773717949 -0.8949515 9.4289484E-5 0.010055501
669082658049 -1.6969994 4.4126147E-11 2.8919894E-8
676580784949 -0.8914978 9.147326E-5 0.009849056
718082495348 -0.91860044 5.2439536E-5 0.006175575
737078718250 -0.8520034 3.517516E-5 0.0044557173
737183705766 -0.7027461 2.4894181E-5 0.00332084
778388508049 -0.9127427 8.523385E-5 0.009261029
788568844950 -0.86594903 7.907233E-5 0.008700265
838069676749 -0.7807895 6.2418246E-4 0.042960893
907870534954 -0.7238604 3.563379E-4 0.028878696
907870544948 -1.2122095 5.2633226E-7 1.2485475E-4
67511111141025350 -0.87106246 2.5462668E-4 0.022577897
67676867495350 -1.0190268 1.8219745E-7 4.9935352E-5
67797649496550 -0.88493484 1.5935937E-5 0.0023644825
71788078658449 -0.80181867 2.5375218E-6 4.8418486E-4
72836680497649 -0.83978033 1.6591996E-5 0.0023976592
77738252545755 -0.7024759 1.5884083E-4 0.015856734
80766975726549 -0.69838864 1.8165592E-4 0.017781047
83766749556557 -1.0492567 5.187943E-4 0.03749917
83766753654948 -0.6527471 2.1101315E-4 0.019634644
83787982685165 -3.9439952 2.3203661E-14 2.3318132E-11
84776977494957 -0.99411273 5.003761E-4 0.0366149
85666583725166 -0.6070708 3.8530183E-4 0.030408584
6582727165805150 -0.7558561 2.1434943E-4 0.01975406
6749521111141025452 -0.69142956 5.8490627E-5 0.006704738
6749551111141025754 -1.0671796 2.0866669E-6 4.1387387E-4
6749111114102495450 -1.4127945 2.220446E-16 3.0428185E-13
6750491111141025455 -0.8453427 2.6075945E-6 4.91336E-4
7273838449724967 -0.93620914 5.882911E-7 1.3642923E-4
7573656549535257 -0.84939027 8.634186E-6 0.0014461302
7573656549545651 -0.73129 5.7378405E-4 0.04004269
7765826775837649 -0.6320392 3.004969E-4 0.02544253
727383845072506669 -1.1901248 1.4976045E-8 6.1013216E-6
65674849515054524650 -0.8948257 1.477918E-5 0.0022278135
65674850504956504649 -0.8896956 3.988663E-5 0.0048882198
65674850504956504651 -1.0284251 4.0913537E-8 1.3622005E-5
65674855525056574649 -0.9437265 1.9140825E-6 3.8990378E-4
67837165767865678449 -0.5739078 6.3124765E-4 0.04305623
72738384507250656551 -0.9516981 2.9521942E-4 0.02514202
72738384507250656552 -1.0707567 2.0293242E-4 0.019196391
8280524554535774544650 -0.7995726 5.871205E-5 0.006704738
8280534556565067504650 -1.2197667 8.619994E-12 6.4968892E-9
678468455048485467494650 -1.031995 2.0418017E-8 7.891826E-6
678468455050505675504655 -0.638278 2.7772642E-4 0.02392256
678468455053535365554651 -0.75320554 6.814418E-4 0.04572594
828049454953518049524656 -0.78981173 6.817454E-6 0.0011546775
828049494549544869504654 -5.125203 1.110223E-16 1.6735502E-13
828049494550535780544649 -0.727382 1.8649356E-5 0.0026029665
828049494552575069514650 -0.88215065 5.300984E-7 1.2485475E-4
828049494553565777524649 -0.79685485 3.7883667E-5 0.0047194907
828052455353537649524653 -0.82404613 3.733932E-4 0.029780578
82804949455250497650494651 -0.7081288 3.8420232E-5 0.004747103
82804949455449496850484650 -1.4296879 2.6053249E-5 0.0034449708
82804949455549518049554651 -0.72161394 4.181222E-4 0.03232192
8280494945495151526550524652 -0.801629 1.7033934E-5 0.0024086474