Cluster Transcription-coupled NER (TC-NER) is enriched in the following gene classes
GeneSet DB Hit Count
Pathways - Reactome.gmt GeneSets 8
Cluster Name GeneSet Name GeneSet DB log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AZAvsCD3-Up in-CD3-activated Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -5.7 2.0E-5 44.0 24.0 9.99
EntryvsLatency-Dn in-Resting Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -3.6 0.00121 44.0 11.0 3.73
IL7vsCD3-Dn in-IL7-activated Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -2.4 0.01886 44.0 16.0 8.68
DISUvsCD3-Dn in-DISU-activated Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -4.1 7.7E-4 44.0 20.0 9.05
DMSOvsCD3-Dn in-DMSO-activated Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -6.4 0.0 44.0 26.0 10.7
SAHAvsCD3-Dn in-SAHA-activated Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -4.2 4.6E-4 44.0 22.0 10.44
EntryvsTCRReactivation-Dn in-Entry Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -2.2 0.03307 44.0 15.0 8.4
LatencyvsTCRReactivation-Dn in-Resting Transcription-coupled NER (TC-NER) Pathways - Reactome.gmt GeneSets -10.4 0.0 44.0 37.0 15.98
Download list of genes
Gene expression pattern of Transcription-coupled NER (TC-NER)
Figure: : Temporal expression patterns are displayed according to the selected conditions and comparisons. Only infected conditions are displayed, during latency as gray lines or during activation according to the color code for each drug. For individual genes, select one from the table below.
List of genes
Name
67677872
67687555
76737149
80677865
80797669
82706749
82706750
82706751
82706752
82706753
82806549
82806550
82806551
88656650
6982676749
6982676750
6982676751
6982676752
6982676753
6982676754
6982676756
7778658449
8079766849
8079766850
8079766851
8079766852
8079766950
8467696549
718470507249
718470507250
718470507251
718470507252
807976825065
807976825066
807976825067
807976825068
807976825069
807976825070
807976825071
807976825072
807976825073
807976825074
807976825075
807976825076